Jakarta

Jakarta is the capital, and largest city, of the archipelagic nation of Indonesia, on Earth.

The city was one of many on Earth that had lost land to the rising sea levels brought on by manmade climatic change. After World War III and contacts with extraterrestrial intelligent species, some of that land was reclaimed with the help of terraforming methods that indigenous Centaurians traded to Earth nations in exchange for warp-drive technology. (extrapolated from Last Unicorn Games RPG: )

One of Helena Adiwoso's earliest memories was of taking the Bima maglev from Denpasar to Jakarta to visit her grandparents. 

Gerald Valentine, chief engineer of USS Accord in the 2290s, was born in Jakarta. (: Avengerpedia; )

Namesake colonies and protectorates
The Jakarta Baru colony in the Centauri system was named after Jakarta. (Star Trek: Shadowstar Station: "Watch and Learn")

Namesake stations
A defense substation commissioned in the 2250s, Jakarta, were named after the city. (Reischl's Guide to Ships of the Fleet)

Namesake starships
USS Batavia was named after Jakarta's Dutch colonial name, Batavia (often Indonesianized to Betawi), used from 1619 to 1942.